frma - Frozen RMA and Barcode

Preprocessing and analysis for single microarrays and microarray batches.

Last updated 5 months ago

softwaremicroarraypreprocessing

4.72 score 57 dependencies 1 dependents

frmaTools - Frozen RMA Tools

Tools for advanced use of the frma package.

Last updated 5 months ago

softwaremicroarraypreprocessing

3.90 score 8 dependencies

ternarynet - Ternary Network Estimation

Gene-regulatory network (GRN) modeling seeks to infer dependencies between genes and thereby provide insight into the regulatory relationships that exist within a cell. This package provides a computational Bayesian approach to GRN estimation from perturbation experiments using a ternary network model, in which gene expression is discretized into one of 3 states: up, unchanged, or down). The ternarynet package includes a parallel implementation of the replica exchange Monte Carlo algorithm for fitting network models, using MPI.

Last updated 5 months ago

softwarecellbiologygraphandnetworknetworkbayesian

3.60 score 19 dependencies

miRcomp - Tools to assess and compare miRNA expression estimatation methods

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

Last updated 5 months ago

softwareqpcrpreprocessingqualitycontrol

3.30 score 4 dependencies

spkTools - Methods for Spike-in Arrays

The package contains functions that can be used to compare expression measures on different array platforms.

Last updated 5 months ago

softwaretechnologymicroarray

3.30 score 4 dependencies